rs39420668 SNP Detail

Summary

• ID
  rs39420668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19524425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTAAGCA GTGGAGTGTA
  GACTAAGTCA GTGATCTCAC AAGCTAAATT CAGTAGTTGT AGGAGGAACT GGAAATTTTT
  TGATACACTT GCTAGTAGAA CAGAACAAGA ACCTGATAGA ACTCATTATC TTTCGCACAA
  AATACTCTAG TGAGATTAGG TACTTAAATA GCCATTTAAA GCTTGGCTCC CAAGGCTACT
  Y
  CTCTGACTTG ATGTGCAATA GCACTATCTT AATAACATTT TTGATGCCTC AGTTTACACC
  TTTGTGAAGT GGTAGAACTG ATCAGATGAC TTTTGATATA TCTTCACATG TCACTATTTA
  TATAAATAAA CAACATATTT AAGATAAACA GAGGACGGAG TATGAAACCA GCTACAGCTC
  CAATTCCTAA GCTCTAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51794162	NES14546394	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39420668					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794162	NES14546394	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19524425 () rs orientation: forward

Symbol	Name	Function Class
Lamp3	lysosomal-associated membrane protein 3	within coordinates
Rr391425	regulatory region 391425	within coordinates
Tssr140331	transcription start site region 140331	618 bp downstream
Tssr140332	transcription start site region 140332	630 bp downstream
Tssr140333	transcription start site region 140333	665 bp downstream
Tssr140334	transcription start site region 140334	695 bp downstream