rs39427592 SNP Detail

Summary

• ID
  rs39427592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:102270027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGGGCA GAAGAATTTT
  CAAGCATAGG GATTGGTGGG ATTTCAAGCA ACCTGGAGGA TTGGTGAAAT TTTGGGTGCT
  GGGGTTGGTA GATTTTGATA TGTTTTCAAA CCCAGAAGTG GACTCTGGCT GTACCCTACC
  CCATCTCTGT TGATAATCAC TAGTTTTTCT ATTGTGTAAC AGCATAAAGT CTTGAGTAAC
  Y
  TTTCAGGAAT AACATACATT CTTCAAAGCA TAACTGTGTT ATTACCATCT CTCTTCAAAA
  GCTTCACAAT TGATTATTTT AACCTAATTC TCATTGTATG TATGTATGTA TTTATTTATT
  CATTTTACAT TCAATTGCTG TACCTCTCCC AAATCATTCC ACCATTCCCA TCCCCTTCTC
  CTCTGAAAGG GTAGAGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50915707	NES14154049	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39427592					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50915707	NES14154049	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:102270027 () rs orientation: forward

Symbol	Name	Function Class
Gm47025	predicted gene, 47025	1828 bp upstream
Gm47101	predicted gene, 47101	1103 bp upstream