rs39430152 SNP Detail

Summary

• ID
  rs39430152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136095358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCACCCAT CTCTACAACA
  ACAGGATGAA AAAGATTTGA GATAGTCCAC TTGTTAAGGC TCTGAGGCTT GTGGGTGATG
  ACAGTGTTAA TCAGTTCAAT GTGTCTTTCA GAAGAGGAAG TGTCTTAGGC TCCCATTACA
  GACATATGGA TCTTAGATTC ATTTTTTTCT GGTGTATTAC AAGTGACACA ACTCATACAC
  Y
  GATTGCCACA GGAGTGGTAT GCTCAACTCT GGGAAACATC TAGAAATACA AGAGGTCATT
  CAGAAATAGG TTGTCGAGAA AAAGAAGTGA ACAGAAAAAC ATTCAGGGCT AGAGCCGTCA
  CCCAGTGGGG CAGGACTTGT ATGGCACGTG ATCAACCATC AACATCACAG ACATTAATGA
  AATTATACCC TGAACCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51446009	NES13995215	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39430152					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51446009	NES13995215	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136095358 () rs orientation: forward

Symbol	Name	Function Class
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr2039	transcription start site region 2039	1927 bp upstream