rs39432187 SNP Detail

Summary

• ID
  rs39432187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44888873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTCTCT TTCCCTGGGT
  CTCTCTCTTT GCTCTCTTTC TTCTAGAGCA GGTGCTCCGA TGTGCTTGGG GGCCAGGGTT
  GGACCCCTGG GGAAGTGAAA GGGCTGCAGA GGAGGTGTGA CAGTCCCAGG AGTGAGGAGG
  GCAGCGAGGC AGTGCCTGAA TATCCGGTGG AGGAAGTGAA CCTCAGATGG CACTTCCTAC
  Y
  TCTGCGGAGA AACCTGAGGG GAGGAGGCCC CAGAAAAGCC AGGCACTGGA GTGGGGGTCA
  CTTGAGCATA CCTAGCATCT TCAAAGTTTC CTATGATGTG CCCAGAAAGA AGTCCCTGAC
  ACTTGTCAAG TCCCCAGTTC CTCACAGATT TCTAATGTGG GAAGTTCCTA TCACCTATCT
  ACCCAAAGCC TAGTTCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51480357	NES13971414	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39432187					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480357	NES13971414	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44888873 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	334 bp upstream
Cpgi19038	CpG island 19038	1121 bp proximal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	1636 bp upstream
Tssr66503	transcription start site region 66503	1625 bp upstream
Tssr66504	transcription start site region 66504	1660 bp upstream
Tssr72351	transcription start site region 72351	693 bp upstream
Tssr72352	transcription start site region 72352	585 bp upstream
Tssr72353	transcription start site region 72353	383 bp upstream
Tssr72354	transcription start site region 72354	346 bp upstream
Tssr72355	transcription start site region 72355	316 bp upstream
Tssr72356	transcription start site region 72356	162 bp upstream
Tssr72357	transcription start site region 72357	154 bp upstream
Tssr72358	transcription start site region 72358	129 bp upstream
Tssr72359	transcription start site region 72359	99 bp upstream
Tssr72360	transcription start site region 72360	62 bp upstream
Tssr72361	transcription start site region 72361	39 bp upstream