rs39432783 SNP Detail

Summary

• ID
  rs39432783
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45826941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCCCCCA GACTGTCTCA
  TCGCGGACGG GCAGTTCCCG CCCGGACCCA CGGGGTCCGA AGGACTGCGG AGGCCCTCGT
  CCAGGACGCC CTCGGAAAGT TTGACATCCC CAAGCCCCGG GCGGGCTCCG TACGACATCT
  CCCAAACGAC TCCTTCGCTC GGGATTTACC CGTTCTCAGC CAGTCGCTGC GGCAGTCCTC
  M
  GCTTTCTCCC TTCACTCCCA ACCACAAGAT CCCGCAAGGC ACCGAAGGCC ACCAGTTTAA
  TTCAGAAAGC TGAACGCCCA CTTCAGGCGC GCTCCTCCAC AGCACTACTT CCGGCCCCGC
  CCATGCCTCC CATACAAACA CCTTTTCCTA TTGGGAGAGC GGCAGGCCAC ACCCCAGGCG
  TCCCAGCAGC GGGGCGGAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51715784	NES14748544	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39432783					SNP	C	C	C	C	C	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51715784	NES14748544	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45826941 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	within coordinates
Cpgi15841	CpG island 15841	within coordinates
Ncapg	non-SMC condensin I complex, subunit G	320 bp upstream
Rr367838	regulatory region 367838	within coordinates
Tssr46141	transcription start site region 46141	285 bp upstream
Tssr46142	transcription start site region 46142	308 bp upstream
Tssr46143	transcription start site region 46143	405 bp upstream
Tssr46144	transcription start site region 46144	634 bp upstream