rs39433704 SNP Detail

Summary

• ID
  rs39433704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26340608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGAAGGA GAGGGTTTTG
  TTAACTACTA TAAGGGAGCC ACAAAGGCAC ATCAACTCAG CCTTACCTTT GAATATGCTT
  TCCACACAAT TCATGTGTGT CCTATGTATA CACTGCTCTT ATGAGTTACG TACATCAGCC
  ACACACACGT GGTAGGTATT CTCTGCCGTG TAACTAGTTC TGCAAAGGTT GATGTTGATC
  R
  CTGGCAAATG ATAGTGGGGA CATGAGGCTT TATGAGGATG ACATATTAAA AGTCTGAAAC
  AATGTCTCTT CAATTCCACA GAATTGCTCT ATTTTTTATT GTTTGTTTGT TTGTTTGTTT
  GTTTAGAGAC AGGGTTTCTC TGTGTAGCCC TGGATGGCCT GGAACTCGAT ATGTAGACCA
  GACTGGCCTT TTAACTCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50513441	NES14088446	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39433704					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50513441	NES14088446	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26340608 () rs orientation: forward

Symbol	Name	Function Class
Kcnu1	potassium channel, subfamily U, member 1	within coordinates
Tssr76727	transcription start site region 76727	963 bp downstream
Tssr76728	transcription start site region 76728	947 bp downstream
Tssr76729	transcription start site region 76729	930 bp downstream
Tssr76730	transcription start site region 76730	915 bp downstream
Tssr76731	transcription start site region 76731	899 bp downstream