rs39438709 SNP Detail

Summary

• ID
  rs39438709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:183978134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAACCGC CATCCGTCCT
  TAGTTAAAAG TCACTAAGTA TACTTTTGAG CTAAAGGCTT ATGTAAATTT TAAACAACTC
  TGGACAGCTG AATTGGGGAG TCTGATTGTT CCTGTTACAT CTGATGTTGT GTTAAGGTCT
  GATCTACACC TTAAGCAGTG GGCAGTTGCG TAACACTCTG GGCTACAGTC CTAATAACTC
  Y
  CTTTTTTGCA TTTATCTGTG GTCTAAAGGA GTGTGCCCCA AATGTACAGT GTTAAAGGCT
  TGACTTCAAG GTGTCACTGT TGGGGCAATT CTTTTGGAGC TGGCACCCCA GACTTCCCTA
  CTGATACTGT TGCCTGCTGA CTCATGGTCT ATGCAGTTTC TCCAACACAT GATCCCGCCA
  TGATTATCAC CCTTGCCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51415044	NES14448720	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs39438709					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51415044	NES14448720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:183978134 () rs orientation: forward

Symbol	Name	Function Class
Rr425191	regulatory region 425191	533 bp distal
Rr425192	regulatory region 425192	548 bp distal