rs39454667 SNP Detail

Summary

• ID
  rs39454667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6094813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGTTTC ACAGTGCAGC
  TTGTGGCTCG GGTCCATCTT ACAGGTGGCT CTTCCTCCAA ATCACGAGGG GGTGGGGTGG
  GGTGGGATGG GGAAGTCTTC CTAGGCTTTT AGGAGATTTC ACTCCTCTTT TCCTGTTCAG
  TGGTCTCTTT GGTCGGCAGG GTGTTCTCCT GCGTCTCGGT TTTCTTCAGC TTGCCCTTAT
  Y
  GAAGCTGGCG ATTTCCCCTA TGTCCGGCTT GTCTGCCATT TTCTTACAAC TCGTGGATTC
  TCCTTCCAAG CTTGCGCTCC AGGTGCTCCC ACTCTCGTTG CTGCAGCAAG AGACCTTATT
  TTGTTTTTCG AGACAGGGTT TCTCTGTGTA GCCCTGGCTG TCCTAGAACT CACTCTGTAG
  ACCAGGCTGG CCTCGAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50575720	NES13653321	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39454667					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575720	NES13653321	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6094813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	1431 bp proximal
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	within coordinates
Gm59262	predicted gene, 59262	1319 bp upstream
Rr370438	regulatory region 370438	1525 bp upstream
Rr405816	regulatory region 405816	302 bp downstream
Rr405817	regulatory region 405817	940 bp upstream
Rr543275	regulatory region 543275	343 bp distal
Rr543276	regulatory region 543276	479 bp distal
Rr543277	regulatory region 543277	1002 bp proximal
Rr543278	regulatory region 543278	1276 bp proximal
Rr543279	regulatory region 543279	1890 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	1793 bp upstream
Tssr154538	transcription start site region 154538	1321 bp upstream
Tssr154539	transcription start site region 154539	1846 bp upstream
Tssr157816	transcription start site region 157816	107 bp downstream