rs39460855 SNP Detail

Summary

• ID
  rs39460855
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49903291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAACCTTC TCTGCTGTGA
  TGAGATATAC CCGCTGAAAC TGGGAGCTAG AAAAACTCCT GCCTCCCTGA TGCTGCTTCG
  CCAGGTATTT TGTCTGAGAT GAGGAAAGCA AGCAGTAAAA CCCCTAGAGC TGGGGTCACA
  GAATTAAGTC ACAGACATGC AGTTTGGTCT TTGCTAAGGT GGGTAACTAA GGCTGCAATC
  R
  TCCACTATCA ACCTAAATAA CTTGGTATTT ATTTAGTACA TACCGTTAAA TAGGAAACCA
  AGAATCAGGG AAGATTAGAG GCGTTCTGGA TAAAAGGTAA GAATCTGGGC TAGAAATATT
  TCCTTTAGGG GCTAGAGGTG TATTTCGGTG ACAAAGCACG TGTGAGACCG TAGAGTCCAC
  TCAGCACCGA AACCAAACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51109889	NES14349789	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39460855					SNP	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51109889	NES14349789	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49903291 () rs orientation: forward

Symbol	Name	Function Class
Gm19334	predicted gene, 19334	1348 bp upstream