rs39463798 SNP Detail

Summary

• ID
  rs39463798
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46653633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAG AGCAGTCTTA CACATCTTCA
  K
  ATCTTGATAT CTGCAGCAGG CCCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51103937	NES14353344	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	G	T	G	G	T		G	G	T	T		T
ss324333670	CHEV_13_46595526	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39463798					SNP	T	G	T	G	G	T	G	G	T	G	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51103937	NES14353344	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46653633 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	1746 bp upstream
Cpgi5539	CpG island 5539	1626 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Rr478915	regulatory region 478915	1520 bp proximal
Rr478916	regulatory region 478916	1702 bp proximal
Rr478917	regulatory region 478917	1803 bp proximal
Tssr119597	transcription start site region 119597	1702 bp upstream
Tssr119598	transcription start site region 119598	1741 bp upstream
Tssr119599	transcription start site region 119599	1880 bp upstream
Tssr119600	transcription start site region 119600	1892 bp upstream
Tssr119601	transcription start site region 119601	1956 bp upstream
Tssr119602	transcription start site region 119602	1984 bp upstream