rs39463911 SNP Detail

Summary

• ID
  rs39463911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45314629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAGCCCC TCCTCCTGCC
  TCATTCCTCC TGTCCCAACC CAGCTCATCC AGTGTGAAAG AAGGAAGTGC CACTGTTCCC
  ATCCAAGCCC CAGGCAAGGG CAGGCACTCC CTGGCTCCTG CGTACCTCAG ACACCTCCAG
  CAGCTCCTAC CATGGACAGG TGGTACCTGG GTGAGTCTCC CAAGCCTGGG TCTCCCTGCC
  Y
  TGCTCAACTT GGATTCAGGG GAGCACCCAT GGCTTTCATA TACACCTGCT GACTCCTCAC
  AATTGTGGGA GAAACAGAAA TGGGAGAGAC AGGCTGCCCT AATAGGGACG GGGACCTCTG
  AGCCAGAGGC TATGGAAATC AACTCCCTAT CAGCCTCCTC ATCCAGCTGT GTGCCCGTGC
  ATCAGACTAC CGAGTCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52013361	NES15030358	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39463911					SNP	T	C	C	C	C	C	T	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013361	NES15030358	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45314629 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	1229 bp distal
Rr195107	regulatory region 195107	1972 bp proximal
Rr200381	regulatory region 200381	1429 bp distal
Rr209195	regulatory region 209195	1372 bp proximal
Tssr84783	transcription start site region 84783	757 bp downstream
Tssr84784	transcription start site region 84784	705 bp downstream
Tssr84785	transcription start site region 84785	173 bp downstream
Tssr84786	transcription start site region 84786	142 bp downstream
Tssr84787	transcription start site region 84787	121 bp downstream
Tssr84788	transcription start site region 84788	90 bp downstream
Tssr84789	transcription start site region 84789	63 bp downstream