rs39470083 SNP Detail

Summary

• ID
  rs39470083
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:26470740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCCTTTGT GCCCACAGGA AAGCGCATTT GTCTTGGAGA
  AGGCATTGCC CGCAATGAAT TGTTCCTTTT CTTCACCACC ATCCTCCAGA ACTTCTCTTT
  K
  GCCAGCCCTG TAGCTCCTGA GAACATTGAC CTCATTCCCA ATAACAGTGG TGCAACCAAA
  ACACCCCCAC AGTACCAGAT TCACTTCTTG TCCCGTTGAA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51885211	NES14904441	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs39470083					SNP	G	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51885211	NES14904441	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:26470740 () rs orientation: forward

Symbol	Name	Function Class
Cyp2b19	cytochrome P450, family 2, subfamily b, polypeptide 19	within coordinates
D7Mit144	DNA segment, Chr 7, Massachusetts Institute of Technology 144	1291 bp proximal
Gm51442	predicted gene, 51442	within coordinates
Rr643909	regulatory region 643909	1927 bp proximal
Tssr65194	transcription start site region 65194	453 bp upstream