rs39475871 SNP Detail

Summary

• ID
  rs39475871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92422163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTGCCAT TGTGTGAGTT
  GTTATAGACC CAGCTTTGTT CTCCTCCAGT GTCTTCTCTA AGAGCTGTAC CTGATTTTGT
  TACCTGTTTT CATCCAGATT CACTGGGGAA GAGGACAATT TTGCTTTTGT TTCTTGGCAG
  GAACCGCTTG ATTCTGAAAC TCTTTTGAGA AGGCATGGCA AGAAGCCAAA TCAGGTGTAG
  R
  GTAGAGGAAA GGAGAAGAGA GTGCTATACA GATTTTGGAG AATAAAAACA AAACATTCAT
  CTTGTGGTGA GAGACAAAGT ATGCCAAACC AATCAAGTGT AGGATACAGA ATGAGGTGGC
  TTATATTTTA GTGAAATAAT TTGAATTGTA GGCAAATGGG TTAGGATTGT TTCCGGTTCT
  GTGGAATCTT TGTGTTTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss52036458	NES15053644	PERLEGEN	MM_PANEL2	f	SNP	G	A	A		G
ss323074134	CHEV_9_92434948	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs39475871					SNP	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036458	NES15053644	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92422163 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	1747 bp proximal
Gm37545	predicted gene, 37545	27 bp upstream
Rr684631	regulatory region 684631	1486 bp distal
Rr684632	regulatory region 684632	1623 bp proximal