rs39476463 SNP Detail

Summary

• ID
  rs39476463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43482976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCACAGT CTGCAGTCTC
  TCCTGGTGCC CCCCATAGAG ACCATCATTG ATTTCCAGAG TTTTTCTTCC TCTGCCTGTC
  ACTCGAGGCC TGAAGCCCCA GCCATGGTCC CTTTCCCATG GACTCTGTTC CCATCCTGCT
  CCCCATGGCT GCTTCTGAAG CTTGCTCCTG CCAACCTGCC TCATCCTCAC CCATCAGTCA
  R
  AGCTGTGCTT CCTCCTTACC TGAGGACCCT AGCTTTAAGC CCTTCCTTTT CCCCTGCATG
  CGATGTATTA TTAAATGTTG TCTTATTAGA TGTCTGGCTT CTTACTACAA GGCTTCTAGC
  ACTTTGTCCG CTCAGGATGT TCCGCTCGGC TTCCTGGCTA GGTGGCTGAT TGCTTTCAAT
  GAACTTATTT AACTTTCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51819001	NES14536964	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39476463					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51819001	NES14536964	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43482976 () rs orientation: forward

Symbol	Name	Function Class
Rr404824	regulatory region 404824	821 bp downstream
Rr516192	regulatory region 516192	1523 bp proximal
Tigit	T cell immunoreceptor with Ig and ITIM domains	within coordinates
Tssr138525	transcription start site region 138525	1917 bp upstream
Tssr141140	transcription start site region 141140	586 bp downstream
Tssr141141	transcription start site region 141141	1491 bp downstream
Tssr141142	transcription start site region 141142	1519 bp downstream
Tssr141143	transcription start site region 141143	1532 bp downstream
Tssr141144	transcription start site region 141144	1747 bp downstream