rs39492771 SNP Detail

Summary

• ID
  rs39492771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:75413616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACACAG ATACCTGTAG
  AATGAGCAGG CATCCTCACC GACTGAGCCT GGGGGCCTAG CTGTAGCATG CAGCCCCAAG
  GCTAAATGAC AGCATCTCCG TTATTGTTGG GAGCGTGAGG ACTCCAGGAA ATGGGTGGAT
  GACTGTTGTC TGAAGGGATC CAGCCTGTTG GAAGGACTGA CCGCTTCCTG AAGGATTCAC
  Y
  ACTCTTCTTT ACAGGAAATG TTTAAATAAT TGAACTCTCT AATTGGGTTA AAGAGATCCT
  GAACACGTGG GTGTTCTATA AGTAAAGGAA TGAGTAAATA ATATAGTAAC CTTTCTCTAT
  GGGCCCTGTG CTTAGAGAGA TCGTTTTGTT TCGTTTATAC AGATATGATC ATCATTGAGA
  GAGTGGGAGA GGGATTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533200	NES14628257	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39492771					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533200	NES14628257	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75413616 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	Intron
Rr369874	regulatory region 369874	1834 bp upstream
Rr404213	regulatory region 404213	506 bp upstream
Rr495436	regulatory region 495436	771 bp distal
Tssr4478	transcription start site region 4478	1224 bp downstream
Tssr126621	transcription start site region 126621	1198 bp downstream
Tssr126622	transcription start site region 126622	1168 bp downstream
Tssr126623	transcription start site region 126623	413 bp upstream
Tssr126624	transcription start site region 126624	457 bp upstream
Tssr126625	transcription start site region 126625	616 bp upstream
Tssr126626	transcription start site region 126626	631 bp upstream
Tssr126627	transcription start site region 126627	647 bp upstream
Tssr126628	transcription start site region 126628	958 bp upstream
Tssr126629	transcription start site region 126629	1633 bp upstream
Tssr126630	transcription start site region 126630	1672 bp upstream
Tssr129768	transcription start site region 129768	1369 bp upstream
Tssr129769	transcription start site region 129769	404 bp downstream
Tssr129770	transcription start site region 129770	473 bp downstream