rs39495255 SNP Detail

Summary

• ID
  rs39495255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148662446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGATGAT ATAGATAGTT
  AGATAGATAG ATAGATAGAT AGATAGATAG ATAGATAGAT AGATAGATAG ATCATGTTGA
  TATATATAAA GCAACACATG ATGGGACAGT ATGTGTGTGA GTGTGTGTGT GTGTGTGAGT
  GTGTATGTGT GTGTGAGTGT GTATGTGTGT ATACACGTGC ATATATGTGC CTTTGAGTTT
  R
  CTACTTTGGT ATACATTTTC CATATTATTT CAGTATATGA GCTACATATT TCGGTACCTT
  TGAGCTTATT AGTTGGAGTT AGGCTCTTTG AGAATCATCC TACCTTGCTT TATGTTTTCA
  TTTTTATATT CCTATGTTGC AATTTATGCA TCTGTTGGTT TTAGTGACTG TCTTACCAGG
  ATTTCTATTC CTGCACAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51544461	NES14869129	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39495255					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51544461	NES14869129	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148662446 () rs orientation: forward

Symbol	Name	Function Class
Rr378797	regulatory region 378797	1699 bp upstream
Rr625251	regulatory region 625251	1627 bp distal
Rr625252	regulatory region 625252	1003 bp proximal