rs39504094 SNP Detail

Summary

• ID
  rs39504094
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27799913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGTTTG CATGTGTTTC
  TGCCCTCACC CACCTCAGTG GCTAGCTGCT TTCCTGCTGT CCCCGACTCA CTCCTCAGAA
  ATGATAGCAG TTAGTATGTG TGAACAGTCC ACCTCCTTCC TGGCTGCTTT CAGATAAGGG
  AAACAGTGCT CACAGGAGTC CTGCCTAGAG CTGATCCCCA ATGCTGAGAG AAGAAGGCTG
  K
  GACTTAAAAG GCCTCACCAT AGACCATACT GGAGAGTGCG GGATCCTGCA GGTTGGACTT
  GGAGGAGTGA AATCCCCACT GATGTTGGTA AAACTCAGCT GGAAGCAGCC ACCTGAGGTG
  TTTAGCTGAT TAGCTAGAGA GCCAGGGTCC AACCTGCCTC TACTCACAGA GTACAAGCAG
  CGGCAGCAGG CAGAAGAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887572	NES14907996	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39504094					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887572	NES14907996	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27799913 () rs orientation: forward

Symbol	Name	Function Class
Fcgbp	Fc fragment of IgG binding protein	within coordinates
Gm10935	predicted gene 10935	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Rr155708	regulatory region 155708	88 bp proximal
Rr170288	regulatory region 170288	2 bp proximal
Tssr65362	transcription start site region 65362	766 bp upstream
Tssr65363	transcription start site region 65363	807 bp upstream