rs39511427 SNP Detail

Summary

• ID
  rs39511427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33190130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCAGAGCCGA GCAGACAGTT CAATCAATCC TGGGTCAATC
  TGTAATTGAA ACCACACACA CTGCCCCTCC TCACTGTCAA ATTTATTAAG CTGATGTATG
  Y
  CAGTGTCTCC TCCTAGTCCA GCAAAGGGCG AATCAAGCAA CAGTAGAACC AAGGCCACCT
  TATCATTCCA TGGCCCAAGG CATTGTATCT TTCTTTTTTT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50968111	NES14414721	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	T	T	T	T	T	T	T	T
ss137582646	ENSMUSSNP1846969	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39511427					SNP	T	T	C	C	C	C	C	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968111	NES14414721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33190130 () rs orientation: forward

Symbol	Name	Function Class
F730043M19Rik	RIKEN cDNA F730043M19 gene	within coordinates
Gm16267	predicted gene 16267	492 bp downstream
Rr256081	regulatory region 256081	71 bp proximal
Rr256082	regulatory region 256082	1471 bp proximal
Rr260246	regulatory region 260246	530 bp distal
Rr263299	regulatory region 263299	1667 bp proximal