rs39512954 SNP Detail

Summary

• ID
  rs39512954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:32663971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGTGTGA AGATAGACTT
  GGTGTTGTCT TTCCAGAAAA CTCTGGAATT AAAAGAGCAC AGCAATTAAA AGAGACCAAC
  CTGGAAATTA ATAAAAACAG ACACATGGTG TATCATCCTG TGTGATTTCC TTTTTCTTTT
  GGAAGGGAAA TCTTTACTTT CTCTGAACGC AGAGTACTGA CTCCAGTGTT TGTGCTGTCG
  Y
  TTGCCTGAGT TTTCGCCTGT CTAGACAGGC TGGGAGGCTG GTGAGGGTTG CTGCCTAGTG
  GGCCTAGCTG CTGTGAGCCT TCAGTGTGTT TTGTTAATGA GCCACTGTGC CTTGTGCTTC
  CAGGAAGTGG GCCGATCCAG CTGTGGCAGT TTCTTCTGGA ATTACTCACT GATAAGTCTT
  GTCAGTCCTT TATCAGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50669030	NES14018995	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39512954					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50669030	NES14018995	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32663971 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	Intron
Tssr84300	transcription start site region 84300	176 bp upstream
Tssr84301	transcription start site region 84301	1782 bp upstream
Tssr84302	transcription start site region 84302	1971 bp upstream