rs39517235 SNP Detail

Summary

• ID
  rs39517235
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:44390288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGAAATT TCCTTCTATT
  CTACAACTGT GTGATTTTAC TACTCTCTGC ATTATTTTAG GCTGTCACTA AGTGGTAACT
  TTGCATTCAC TTTAATATTA TTTTTCTTCT ATGGGACCAT TGTCAGTTGT GATGTTTAGT
  TTGAATGGCC TGCTTTCAGT CATCAGAATG GAGTGCTCTT TTCCAGTAAA CAATGTTGGC
  R
  TTCTTTTATT CTTTTATGAG TAGGTATTGT ACAAAGCCCT AGCCTGACAA GATCAATGAG
  AGGCACTTCC CACCCATAAG TGTATACTAT GAATGGATGT AGTAAGCATA GACAGATGCA
  CATAGACAGA CAGACACACA CACACACACA CACACGGGGG GGGGGGGGGC AGGGGTGCTG
  ACACAAAGGG CAGTCGATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51099414	NES13872069	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39517235					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51099414	NES13872069	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:44390288 () rs orientation: forward

Symbol	Name	Function Class
Gm35959	predicted gene, 35959	within coordinates
Gm42984	predicted gene 42984	within coordinates
Gm72570	predicted gene, 72570	within coordinates
Rr610954	regulatory region 610954	1048 bp proximal