rs39520451 SNP Detail

Summary

• ID
  rs39520451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61327859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTCAAG TACTCTCCAT
  AAAGCACTTC TAAGTTCTCC TGGACACCAG ACTCCCAGAC ATTGGGGCTA TGCGGAAGGG
  TTCACTTCCA TGCAAAGAGT CTTCAGCTAT CCCTACAGCA CCTCCTTGAG AACTCAGAAG
  TGAGGACACT CACCGGTGTG TGTGGGTGGC TGGATGGGTG TTGTGGAGAG CTCGAGCCGT
  Y
  GCCGTAAATG AAGAGGCATT AGTCCCCAAA CCTACTCTTT TCTGTCCTTT GCAGCTTAGG
  AGTTAATCCT GGTAACATGT TCTTAAATGT CAAGCTGCCA GAAACATCCC TGCAGAGGCT
  CACTGGTTTT GCTACAATGT AGCCAGAAGC ATTAGTCTGA TGAATTCATC TATCACTTCA
  GGCAGTCTCA AAGTTCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50413764	NES13453164	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39520451					SNP	C	C	C	C	C	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50413764	NES13453164	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61327859 () rs orientation: forward

Symbol	Name	Function Class
Rr354846	regulatory region 354846	660 bp distal
Rr356345	regulatory region 356345	within coordinates
Tssr153542	transcription start site region 153542	1411 bp downstream
Tssr153543	transcription start site region 153543	1577 bp downstream
Tssr153544	transcription start site region 153544	1759 bp downstream