rs39527789 SNP Detail

Summary

• ID
  rs39527789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36788310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAGGAGT CTTCTATTGG
  CTGTTACCTG TACCAATGTC CAAGAGTAAT CGAGGGACAA AGGTGACCCT GCAGGAGTAG
  AGCTTTTAGT CCACTAATCT TCGTTTCTGC CCCTCCCCCC ACCCCGCCCT CCAACGAAAA
  AATGGACAGA AATTCACATT TACACCTGAT CTGTATTCTT TACAGTCTCT TCTGCTAAAC
  Y
  ACCTTTCCAC ACACAAATTG CACATGCCTT CCTCAAGACC AACTCCCAGG CTATGCACAT
  CCCTGTTTGA AAGTTCATCT TTGCCATGAA ACAGTCCATG TGAGTGTTCA TCTGGTGTCA
  CCTGTGTACA TCATGAACTA CTCATAAGCT TTCTTTACTG TGAGAAAAGT TCACCATTTC
  CTACAGTTCC ACAGTGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51286109	NES13784045	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39527789					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51286109	NES13784045	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36788310 () rs orientation: forward

Symbol	Name	Function Class
Ptn	pleiotrophin	1196 bp upstream
Rr135017	regulatory region 135017	1491 bp proximal
Rr146140	regulatory region 146140	509 bp distal
Tssr60337	transcription start site region 60337	1401 bp upstream
Tssr60338	transcription start site region 60338	1375 bp upstream
Tssr60339	transcription start site region 60339	1351 bp upstream
Tssr60340	transcription start site region 60340	1318 bp upstream
Tssr60341	transcription start site region 60341	1284 bp upstream
Tssr60342	transcription start site region 60342	1249 bp upstream
Tssr60343	transcription start site region 60343	1228 bp upstream
Tssr60344	transcription start site region 60344	1188 bp upstream