rs39529955 SNP Detail

Summary

• ID
  rs39529955
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:25776535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCTCTC TTCACAAGGG
  ATGGGAGAGA GCAAGTAGCA AAGGTAACAC GGTGCCCCCT CTGCCACAGG TATAAAGTGC
  TGATGAGGAA CTTGGCCCTG CCTGACGACA TCCGAGGGAA GTGCACTGTG CTCCTGCAGG
  TCTATGACGC TTCTAACAGC GAGTGGCAGC TGGGGAAGAC CAAGGTACAG TGGCAGGAAC
  M
  ACCGCCACCA TGCCTGCTCA GGGTGCTGCT GATACCCAAG GCTGTACCGT TCCCAAATGC
  GGCTAAGTGG TGGTTGTTAA CATCCTAATG GTTCCTGTGG GAGAGAGAGG GAGAGAGGGA
  GAGAGGGAGA GAGAGAGAGA GAGGGAGAGG GAGAGAGGGA GAGAGGGAGA GGGAGAGGGA
  GAGAGAGAGA GAGAGAGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51610585	NES14603672	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs39529955					SNP	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51610585	NES14603672	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:25776535 () rs orientation: forward

Symbol	Name	Function Class
Myo10	myosin X	within coordinates
Tssr130835	transcription start site region 130835	52 bp downstream
Tssr130836	transcription start site region 130836	1670 bp upstream