rs39536484 SNP Detail

Summary

• ID
  rs39536484
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8441598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCCTCGT GCTTCTCCTC
  GGCCAATTCG CCGAAGAAGT GGCCTATGCC CTCCAGAGCC ACGTCATCCT GATCAAAAAA
  GAAGCCCAGA GAGAGGTAGG TGGAGGAGGC CGGCTGGTGC AGTTGAGCAG GCGGTTCACG
  GCAGCTTCCA TCTCGGTGGA ATCATTCTGA CGAATCTGAG AGGTCATGGC TGATCCGGAG
  W
  ATGAGCTAAC CATGAATAGA CGGTGCAGAC TGGTCCTAGG AGCCAAAGGC AGCAAGGAGA
  TGATGGTTCC AGAGGCTGCG ACTGGAGAGA CTTGTAAAGC GGCTGGAAGC TAGTACAGTG
  GGAGTCCCTG GGTCTGTTTC GTCCAAACAC TGTTGAAGCA AGGCACAGAT CCATGGGACC
  TCCAAGGTGC TGCTCCTAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51776916	NES14544641	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39536484					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776916	NES14544641	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8441598 () rs orientation: forward

Symbol	Name	Function Class
Gm7541	predicted gene 7541	14 bp upstream
Gm49549	predicted gene, 49549	1475 bp downstream
Gm55031	predicted gene, 55031	464 bp upstream
Tssr139859	transcription start site region 139859	193 bp downstream