rs39541083 SNP Detail

Summary

• ID
  rs39541083
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:39630788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCTGATT CACATTCCTT
  TCCAAGTGCA GTGTACACTC GACTGCATTC AGCCGGCTCT CCCAGGTATC ACAGTCTGGT
  TTCTTTATAT CCGGCAGGAA AATTCAGCCA CTTCATTGGT TCTACAGCTT CATCAGAGAT
  TGGCAGAGAA AGTATTTGGC AAAGTTCTTC AGAGTCGCAT CATCCCGGTC AAAACAGCAA
  S
  CCACAGACAG AGGCAGGAGG CATGTAACTC CGAGTTGATC TGATGGTTGC CAGCAGCCTC
  CTGATCCTGA TGGTAATTCG GCAACACTTT CGTGGGAGCA GCATTGGTCA TGGCAGTGGC
  AGGGCAAGGT GCAGCAGAGC AACTAATTTG CAAAGGGCTC AGGCTCAGAA AAGCCAACTG
  GGGTCAGAGG GGTTGGGCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51616044	NES14841091	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	C	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39541083					SNP	G	G	G	G	G	C	G	G	C	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616044	NES14841091	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:39630788 () rs orientation: forward

Symbol	Name	Function Class
Braf	Braf transforming gene	within coordinates
Fth-ps2	ferritin heavy chain, pseudogene 2	66 bp upstream
Tssr1816	transcription start site region 1816	50 bp downstream
Tssr60501	transcription start site region 60501	258 bp downstream