rs39544238 SNP Detail

Summary

• ID
  rs39544238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34524832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCTCCA GGTTGGGTGG
  CAGAAACGAA CGGTAAACTG GGAGGTTATG GGACTAGAAA GAAGGTCACC TAACATTTGG
  GGCATGAAGA TGGGCCCGCG GGATGGGCGG GGCCGGCGTG GGAGATTCCT TCAGATCATT
  CAGGCAATCT GTCTGGGCCT CTGCCCTACC CTGCCTGCTC CGCGCTGGTG CTACCTTCAG
  R
  GACGCAGTGC AGATCCCCCA AGGCGCTCTC GGAAACACCG AATCCTTGCT TGGGCTTGCT
  GGTCAGATAC TTGGGGTCCT TTATCAGTTT GTAAATTGCT CCTCTCGTAG CCCCCTAAAT
  AATTTCTTTT GTATCAGTTC CAGGATGTTG CTAGATCTCA GCCTCCAAAA AGTCAGTTCC
  TTGTCCAGCT GGAAGATGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51237326	NES14284674	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs39544238					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237326	NES14284674	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34524832 () rs orientation: forward

Symbol	Name	Function Class
4930568A12Rik	RIKEN cDNA 4930568A12 gene	within coordinates
Cpgi120	CpG island 120	within coordinates
Gm32566	predicted gene, 32566	within coordinates
Rr409037	regulatory region 409037	1302 bp distal
Rr409038	regulatory region 409038	852 bp distal
Rr409039	regulatory region 409039	within coordinates
Rr409040	regulatory region 409040	172 bp proximal
Rr409041	regulatory region 409041	451 bp proximal
Rr409042	regulatory region 409042	1846 bp proximal
Tssr36	transcription start site region 36	422 bp downstream
Tssr11221	transcription start site region 11221	173 bp downstream
Tssr11222	transcription start site region 11222	197 bp downstream