rs39553301 SNP Detail

Summary

• ID
  rs39553301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92032033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAA CCAACAGTGA GTTAGAATTT
  Y
  CAGAAAGTGA GCTAAAATTA TGTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50605909	NES14042920	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C		T	T		T
ss145568256	ENSMUSSNP3738256	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss322790913	CHEV_8_93829304	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39553301					SNP	T	T	C	C	C	T	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605909	NES14042920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92032033 () rs orientation: forward

Symbol	Name	Function Class
Gm45428	predicted gene 45428	562 bp downstream
Rpgrip1l	Rpgrip1-like	within coordinates
Rr382458	regulatory region 382458	58 bp downstream
Rr406224	regulatory region 406224	within coordinates
Rr407238	regulatory region 407238	30 bp distal
Rr667510	regulatory region 667510	443 bp distal