rs39555630 SNP Detail

Summary

• ID
  rs39555630
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55377456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTTGATG TTTCTGAGGC
  TGTACTGTGA TAGAATTATT GGTGGTAGAA TGATAATTTC AGGAATTGTA TTGTCCGTGT
  CTTTGATTTG GGTGTAACAC TAATATTTAT GGATTTGGTG ATGCAACCGA GCTTGCAAGC
  AGATGGCTCC GAAGGACTCT TCTCCCAGTC AGGGTCTGTT CGTACTCATA CGGTGAATGG
  W
  ACCTCAATTT TTCACTTGCA CTTCTTTTAA AAAGACAAGA ACCTATCTAT TCAAGGACAC
  AGTGTTTGTT GTATTTGGAA ATTCACTGTG CCCGTCCTTC CTCGGAATGC TCTCTTCAGG
  GTATGTTAGA GGCAGGGCTG TAGCGCAGAG GGAGCTGTGC CGAGCTGTTG GAATCCTGCA
  GCCCGTCTTT CTACTTTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51220884	NES14295786	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39555630					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51220884	NES14295786	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55377456 () rs orientation: forward

Symbol	Name	Function Class
D19Mit35	DNA segment, Chr 19, Massachusetts Institute of Technology 35	1289 bp distal
Vti1a	vesicle transport through interaction with t-SNAREs 1A	within coordinates