rs39567366 SNP Detail

Summary

• ID
  rs39567366
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145881544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTA CGGCATGGCA CAAAAATCCC
  D
  AAGCTTCAAG AGTCAAAAGC TCTGG                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss51464084	NES13986194	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		A	A		G		A
ss133984570	ENSMUSSNP5408639	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A				T
ss322075173	CHEV_6_145884338	CHEVERUD	SCREENING_POP	f	SNP										T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs39567366					SNP	A	A	A	A	A	A	T	A	A	T	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51464084	NES13986194	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145881544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18164	CpG island 18164	1377 bp distal
D6Mit200	DNA segment, Chr 6, Massachusetts Institute of Technology 200	374 bp distal
Rr641247	regulatory region 641247	1686 bp distal
Sspn	sarcospan	within coordinates
Tssr59564	transcription start site region 59564	1682 bp downstream
Tssr59565	transcription start site region 59565	1657 bp downstream