rs39571664 SNP Detail

Summary

• ID
  rs39571664
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36053261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT TAACTTTCCT GGTCTTTTAA
  W
  GGAATTTTTC AGCTTGGAGC ATTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51452916	NES14433129	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs39571664					SNP	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51452916	NES14433129	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36053261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13078	CpG island 13078	1125 bp proximal
Mccc1	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	within coordinates
Mccc1os	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand	801 bp upstream
Rr397641	regulatory region 397641	1442 bp upstream
Rr575296	regulatory region 575296	631 bp proximal
Rr575297	regulatory region 575297	833 bp proximal
Rr575298	regulatory region 575298	1556 bp proximal
Rr575299	regulatory region 575299	1658 bp proximal
Tssr28858	transcription start site region 28858	1305 bp upstream
Tssr33012	transcription start site region 33012	1452 bp downstream
Tssr33013	transcription start site region 33013	1505 bp downstream
Tssr33014	transcription start site region 33014	1538 bp downstream
Tssr33015	transcription start site region 33015	1550 bp downstream