ACACGGACAC ACACACCCCA CATAATGTTA GGAAACTGAT GAAGAGGAGG AGGAGGTGGA GGAAGAAGAA TCCAGTTCAC AGGTGTTTGC AGCAAGCCTG K CTAAGCTGAG GCCTTGTCCT CTGAAGACCT GTATCTGGTG GCCGTGCTGA ATCAATGTTG AGGATACAGT ATCTTAGTCA GCCCTGCTAT TTTCTTTCTT K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51563534 | NES14676710 | PERLEGEN | MM_PANEL2 | f | SNP | T | G | G | G | G | G | G | G | G | G |
SNP Consensus Information | |||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
||||
rs39579985 | SNP | T | G | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51563534 | NES14676710 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr3:84565286 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm37240 | predicted gene, 37240 | within coordinates | ||||||
Rr68541 | regulatory region 68541 | 1886 bp distal | ||||||
Rr68542 | regulatory region 68542 | 115 bp proximal | ||||||
Rr68543 | regulatory region 68543 | 915 bp proximal | ||||||
Rr76452 | regulatory region 76452 | 1006 bp proximal | ||||||
Rr83250 | regulatory region 83250 | 1985 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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