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rs39579985 SNP Detail
Summary
  • ID
    rs39579985
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:84565286 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ACACGGACAC ACACACCCCA CATAATGTTA GGAAACTGAT
    GAAGAGGAGG AGGAGGTGGA GGAAGAAGAA TCCAGTTCAC AGGTGTTTGC AGCAAGCCTG
    K
    CTAAGCTGAG GCCTTGTCCT CTGAAGACCT GTATCTGGTG GCCGTGCTGA ATCAATGTTG
    AGGATACAGT ATCTTAGTCA GCCCTGCTAT TTTCTTTCTT                      
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
ss51563534 NES14676710 PERLEGEN MM_PANEL2 f SNP T G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
rs39579985 SNP T G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51563534 NES14676710 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:84565286 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm37240 predicted gene, 37240 within coordinates
Rr68541 regulatory region 68541 1886 bp distal
Rr68542 regulatory region 68542 115 bp proximal
Rr68543 regulatory region 68543 915 bp proximal
Rr76452 regulatory region 76452 1006 bp proximal
Rr83250 regulatory region 83250 1985 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory