rs39581736 SNP Detail

Summary

• ID
  rs39581736
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72264382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCTGTGT GCCCTTTGGG
  TGATGAGCAT CCAAGTTGAG GAATTTTCTT AAGAGCATCA AAGAGTAGGG GAAACAAACT
  AACACATTCC AAAGAGATCT GAGGGAACCA AGCAGTTTCA GAGCCTGCTT AGCAGTGGAT
  CACCCCAGGG AATGGGAAGG AGGCAGCTTA AGTTTCTCAT TCTTGCTAGC ATCAGACCTT
  R
  CATAGCAAGA AGCACCTCCA GAGTCTGAGC AATCTGCCAA TTGCAGGCCA TCATCTCCCC
  AGTGATCCCC AGTCCCCACA TTGTTATATA CGGGAGGTCA CTGACCATTG ACCCTTCCTT
  GCTGCCTAAA CTACTTAGCA TATTCGTACA TCTTGCATTC TCTTCTCTGT GTCAGTGTCT
  CCAGGCTCCC TGACTTACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	NZW/LacJ	WSB/EiJ
ss50743282	NES14241844	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	NZW/LacJ	WSB/EiJ
rs39581736					SNP	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50743282	NES14241844	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72264382 () rs orientation: forward

Symbol	Name	Function Class
Gm37303	predicted gene, 37303	467 bp downstream
Gm37581	predicted gene, 37581	127 bp upstream
Tssr85980	transcription start site region 85980	674 bp upstream
Zfp280d	zinc finger protein 280D	within coordinates