rs39597795 SNP Detail

Summary

• ID
  rs39597795
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108626859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCCTGAA TTCTCTAGAG
  AGGTTAGGAA TTCTTGCCTC TTCTTTAAAG ACAAGAAAAC AAAGGCTCAT AGCAGTCCAT
  AATTTGCTGA ATACCACACT AATGATAAAG ACTTCAGTGT GCAGTCCAGA TCTCTGCCCA
  TCACACTGTC TCCCAAAGGA CTGACTCTGC TTGTCTGGTA GCTAGCAAAC TGTAAGGATA
  R
  CACACCTTCA TCAGAACTAT TTATGAACAC TTCACTTGGC CCATCTTTGT AGACAGAGAA
  TGTAAGTGGA GAATTCATTG ATGTCCATTT TCTTTCTCTC ATAGCATGTA TAACCTCTTT
  CCCACAGAGT AACTCCAATG CACACCTGTA GGTGTAGCAC TTGGGAGACT GAGTCAGGAA
  GATTGGTTCA AGTTTTAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51047091	NES14373262	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39597795					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51047091	NES14373262	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108626859 () rs orientation: forward

Symbol	Name	Function Class
Evl	Ena-vasodilator stimulated phosphoprotein	within coordinates
Mir342	microRNA 342	1882 bp downstream
Tssr114995	transcription start site region 114995	1892 bp downstream