rs39602252 SNP Detail

Summary

• ID
  rs39602252
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:26758049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTAAAGC AAAGGTTTAT
  CATGTAGTGA TAAGGGGTTA ATTATAAACT AAAAAAAAAA AAAAAAAAAA AAAAGTTAAA
  AGTTCAGAAG CAATGTTGAC CTGGTTTTGT AACTACGTTG ACTGTGCTTG CATGGTGGGA
  TGTGGTATTT TGTGTGTGTG TGTGTGTGTG TGTGTGTGTT AACTTTGCCT TTTTATCTTC
  M
  ACATTTCTTT CTGTCTAAAA TGAACTCTCA CATGAACAAA TTTTATTTTA AGGAAACAAA
  CCCAGCAGTT AAGTCTTGGA ACTTTTTTCA CTGCAACTCG TTAAAATTCC TCAACGGGTG
  GGGATGTGGC ATGGTCAATA GAGTGCTTAC TTAGCATATA ATAGCCTTAT ACAGCAAGTG
  TATACAGGGT CCTTCATACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50831490	NES14195951	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39602252					SNP	C	C	C	C	C	A	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50831490	NES14195951	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:26758049 () rs orientation: forward

Symbol	Name	Function Class
Arhgap18	Rho GTPase activating protein 18	within coordinates
Tssr92804	transcription start site region 92804	1319 bp downstream
Tssr92805	transcription start site region 92805	840 bp downstream