rs39602628 SNP Detail

Summary

• ID
  rs39602628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:42265086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGGGTGT CAGGCTCAGA
  ACCTGGAGGT GGGCTGTATA GATGGTGTCA GCACAAGGGT CATGAGGATC TCTGAGCAGT
  TGCTCATGAG TACCGGTAGG TACACAGTGG GGAGGGAAAT GTGTTGAGCA GGATATAAAT
  GTCAGAGACA GCTCATCCTC ACCCCAGTAC TGGTCATTTC TGGAGAAGGC TGGATGACCA
  Y
  GTGAGAAAAG GTGCTATCAG AGCACTTTTT CTTTTCTTTT CTTTTCTGTT GGTTTTTCAA
  GACAGGGCTT CTCTGTGTTT CCTTGCCTGT CCTGGAACTA GCTCAGTCAG TCAGGTTGAC
  CTAGAGCTCA CAGAGATCCA CCTGGCTTTG CCTCCAGAGT GCTGGGAATA AAGGTATGCA
  CCACTGCCCA GCTAGTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51633912	NES14838011	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39602628					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51633912	NES14838011	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42265086 () rs orientation: forward

Symbol	Name	Function Class
Clcn1	chloride channel, voltage-sensitive 1	within coordinates
Rr629312	regulatory region 629312	41 bp distal
Tssr56008	transcription start site region 56008	1481 bp downstream
Tssr56009	transcription start site region 56009	1465 bp downstream
Tssr56010	transcription start site region 56010	1434 bp downstream