rs39605875 SNP Detail

Summary

• ID
  rs39605875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126681953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACC GGAAAAGGCT GGTGTGGGAC
  R
  TGGAGAAAGT TCATAAACAG AGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss50943607	NES14265027	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A		G		A	G	A		G
ss147726530	ENSMUSSNP6644930	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
ss323528335	CHEV_10_126283140	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs39605875					SNP	G	G	A	G	G	G	A	A	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50943607	NES14265027	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126681953 () rs orientation: forward

Symbol	Name	Function Class
Gm66841	predicted gene, 66841	within coordinates
Rr440688	regulatory region 440688	1036 bp distal
Rr440689	regulatory region 440689	1183 bp distal
Rr440690	regulatory region 440690	155 bp distal