rs39610439 SNP Detail

Summary

• ID
  rs39610439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:34269492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGGTGCTT ACTAATGAGC TAAATTATTT ACCCTGTGAT
  AAGCTTTATC TGGTTTATTT GGATCCAAAG ACCATGCTGT TTCCAATCTA CTTCAGTCCA
  Y
  GTGCATTAGG CAGATTCCAT GACAACCCCT CTTCAGCTGT TCAAATGCTA ATATAGGTAC
  TGCTGAGATG ACCTTAAGGA TTCCTGGGTA GGCTATCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51083453	NES14363202	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	T	C	T	C		T	T	T	T		T
ss148857461	ENSMUSSNP2113394	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss324313049	CHEV_13_34177378	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39610439					SNP	T	T	C	C	C	C	C	T	C	T	C	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51083453	NES14363202	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:34269492 () rs orientation: forward

Symbol	Name	Function Class
4930447K03Rik	RIKEN cDNA 4930447K03 gene	within coordinates
Gm47065	predicted gene, 47065	1628 bp downstream