rs39636468 SNP Detail

Summary

• ID
  rs39636468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19541708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAATGGTT TTAAACTAGA
  GCACACATGC ACACGCACAA ACACACACAC ACACACACAC ACACACACAC ACCATATGTG
  GTGGGGGAAA GGTTTGACAG GTTGTTGGTG GTGGTTGGTG GTTTATGGGT TTTTTGTTTT
  GTTTTTGTTT GATTGATTGA TTGATTGATT GATTGATAAC AGCAAACTTT TAAAGGACAG
  R
  TACATTCTTG CAATATGTGG AGAATGACTG TCCTCAAAGC CAGCAGCTGG CAAAGGAGTT
  GTTCTCTGAG TTTTGAAGTC ACTTTCAGGC TGTGTGGCAA AATAAGTAGA CTGTTAATTG
  AGGTTGGGTA AGAGGAAAAG CGAACCACAG ACCTTCGTAG ACAAATGCTG TAGTTCACAC
  CACATGGTTC CCTGCATGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51793988	NES14546234	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39636468					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51793988	NES14546234	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19541708 () rs orientation: forward

Symbol	Name	Function Class
Gm17799	predicted gene, 17799	354 bp upstream
Rr512780	regulatory region 512780	1370 bp proximal