rs39641354 SNP Detail

Summary

• ID
  rs39641354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48529765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGAAAT AAGTGCTAAT
  TCCACCTAGC GAAAGTAATG ACCACCAACT CAAATTTTTT GGTTGAATTA AGCAAGCTGT
  CTCCCTAAAG TGGGGTTTGA GAGGACAGCT CTGAACATAG GAAAATTGAG GTATTTTTTT
  AGTAGCCCCA AAACTTCAAA GATAGGGGAT TCCAAGGATT TTTGGTTACA TAGAAACTTG
  R
  CAGAACATCT CAAAATTATT TGGCAGAGCA TCGTATATTA TCAGGGTGGA GGTCTCGGTA
  TAAGGGTGTG GAAAAATTCC AGAAAAGGGT CAAGACAGGG TCAAATCCAA GTTTTACAGC
  AAACAGGAAT GAACTTTCTT CCACCTTTTA AGGAGATGGC TTCAGTAGTT CTTAAGTGAC
  TTGCCTAAGG CAGTCCTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51307149	NES13774522	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G	G	G	G		G	A	G	G		G
ss321793653	CHEV_6_48502830	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39641354					SNP	G	A	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51307149	NES13774522	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48529765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	1626 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	1173 bp downstream
Lrrc61	leucine rich repeat containing 61	1967 bp upstream
Rr399635	regulatory region 399635	1687 bp upstream
Rr629686	regulatory region 629686	120 bp proximal
Rr629687	regulatory region 629687	805 bp proximal
Rr629688	regulatory region 629688	1932 bp proximal
Rr629689	regulatory region 629689	1985 bp proximal
Tssr56137	transcription start site region 56137	1945 bp upstream
Tssr60734	transcription start site region 60734	1826 bp downstream
Tssr60735	transcription start site region 60735	1843 bp downstream
Tssr60736	transcription start site region 60736	1886 bp downstream