rs39645271 SNP Detail

Summary

• ID
  rs39645271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:51279475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACATTGGA TTTTATCCAC
  TTTCTTGGTA AGTTAAGACA GCTTCACTCT TGGTCAGGAT TCAAGACTCT GGGTCATTTT
  ATTAACCAAA TTATAAACAT TTCTCTTCCC TGTTCCTTAA GAGGAGTTGC TGAGGGAGTC
  AGGGGGAAAG ACATTCAATT CAGCAGAATG CTTCTTATCC CTCTTCGTTG TTTTTCCATC
  R
  GGAGTCATTA AGTATTATGG GAGGAAGGCT TTAGTCACCT CTGTAGAGGA AGTAAGATGG
  GATTTCAGAG GACAATTCCT TTTCAAATTT GTAATGTTTT ACGATGAGGA CATATTTAAA
  AGAGTGATAA AAAAATTTTG GAGCAAGTTA ATTTTCTTTT AAGTAATAGA GGACATGTGA
  GACTCAGAGC AGTTTAGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51892403	NES14921733	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G	A	G	A	G
ss149254860	ENSMUSSNP799816	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39645271					SNP	G	A	G	G	G	G	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51892403	NES14921733	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:51279475 () rs orientation: forward

Symbol	Name	Function Class
Gm45072	predicted gene 45072	1998 bp upstream
Rr647264	regulatory region 647264	1080 bp distal
Rr647265	regulatory region 647265	1431 bp proximal
Slc17a6	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	within coordinates
Tssr66884	transcription start site region 66884	1046 bp downstream