rs39653355 SNP Detail

Summary

• ID
  rs39653355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43449071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGTCTA CTAGGAAACT
  ACTTATGTAG CATCTATTCT CAATGAAAGA CGTGGCAGAG GGAAAGCGTG AGTGTGAGCT
  TCGTGGTAGT GAGGCTGGCC CTTTGGTGAT CGCAGGCACG AGGTAGATGG TCCCAACTCC
  ATTGTTCTTG CTTTCTCTTT CTTACCAAAA ATTTTCTCAT TTCTTATTTC CTTTTAAAGA
  Y
  AACTACGTGC TACCCAATCA TCTCTTCACT TCCCCACCCC TGAAAATCTT ACATTATGAC
  CCCTAACTGT TCGTGAATTT CTCCTACCAC TCTTCTTAGC ATCTTTCTTT AAACGAGTTC
  ATAAACTTGA GACTTGTAGG CAGAATGAAG CATGTCTTCC TTTCCGCTGC AGATTTTAAA
  GGTTGTCAGC ATCTGAGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51819358	NES14537461	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39653355					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51819358	NES14537461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43449071 () rs orientation: forward

Symbol	Name	Function Class
Tssr138523	transcription start site region 138523	1565 bp upstream
Tssr138524	transcription start site region 138524	1604 bp upstream
Tssr141139	transcription start site region 141139	145 bp downstream
Zbtb20	zinc finger and BTB domain containing 20	within coordinates