rs39654228 SNP Detail

Summary

• ID
  rs39654228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:41033749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCTTGC AGCAGTGCGC
  TGTCTCCTCG TTTGCCGAGA TAATACTAAT TTTTATTGCT GCAATGTACA ATTCACCCAC
  AAATAACTAG GTGGCAATAT CACCTAAATT TACACATAGG TGGGCATGAT TGCTGCCAAA
  GGAAAAGCCG TCTTAAGACT TCTGTTAGTT TTGTTCCAAA ATCTACAGTA ACGGCTTCCA
  R
  GTAAAGCTCT AATTAGGAGA TATCTAAAGT TATCAATGGA GTATGATGAA GTCTTAAGGT
  TAAAGCTTTC AAAAATAAAA CTGAAAACAA AAAAGTACCC TGCTGTTTTA TGCCAACATT
  TTTTATTTCT TTTAAATGCT ACCATGTGCT ACTGAGGCCC TGTAGTAAAC AGGTAACTTC
  TGGAGTCATT TAAGGTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51242044	NES14285455	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39654228					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242044	NES14285455	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:41033749 () rs orientation: forward

Symbol	Name	Function Class
Gm70541	predicted gene, 70541	106 bp downstream