rs39656816 SNP Detail

Summary

• ID
  rs39656816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87675380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCTCCA ACCCCCTAGG
  CCTAGCATAG GCAGGGGTTG AGAACTGACC CCTTATCCGG CCCTGCCTAG AGCTAAGGCC
  TGGCTGAGCC TGGGAACTTC AACCAGCACA CGCTGTTCCA GTCTCCGGGG ACCAGGGGTC
  ACCGTCCCCA GCTGGGGCAG CAGGCTCTAC TAAAAGTCCA AAACAAGGAG TCACGAGTCC
  R
  TGGCTAGAGG CTGGAAACAG GGATGCGAAG TGAGGGAGGC CTTGCTGGAT GGAGCTTGGG
  TTCCCGGGCC CCAGGGCTCA CACTATCAGC CTGGCTATGG GCCCACATCA TCCAGGAAAA
  AGAAAAACAA ACAAAAAAAC AACAATAAAC AAGCCTCAGA GACTGTAGGT GCCTATGGCT
  GACCTCTCCC CTACAAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	DBA/2J	WSB/EiJ
ss51576095	NES14670073	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	DBA/2J	WSB/EiJ
rs39656816					SNP	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51576095	NES14670073	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87675380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13336	CpG island 13336	704 bp proximal
Pear1	platelet endothelial aggregation receptor 1	within coordinates
Rr579541	regulatory region 579541	within coordinates
Rr579542	regulatory region 579542	400 bp proximal
Rr579543	regulatory region 579543	860 bp proximal
Rr579544	regulatory region 579544	1069 bp proximal
Tssr33952	transcription start site region 33952	859 bp downstream
Tssr33953	transcription start site region 33953	894 bp downstream
Tssr33954	transcription start site region 33954	986 bp downstream