rs39658583 SNP Detail

Summary

• ID
  rs39658583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95942725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTGAGCT TTGATCGTTC
  TGAGAGCCAG CTGCTTTAGT AGACCATCTG ACAAGAACCA AACAGCCCAG CCAAGGTTGG
  AAGGCCACCA GATTCAAGGC AGCTATCTCC CAAGAGTACT GCCCAGTAAC AGAGAATGCC
  TACACCCCAA AAGACTATCA GTCCAGCCTA AAACCGAAAC AACCCATTAA TCCTCATTTC
  Y
  TACTAAGAGT CCACACTCCT TCAACAGAGT AGAGCATCTG AGTGTACCAC CATAAAAATA
  GTTTAAAAAA TGAAAAATAT TCATAAGAGC CCATCTGAAC TCACTCTGGG TTTATCATTT
  TCTGGAGTAA CCTCTCATAA GAAAAAGAGA ATCATTAACC TAAAAAAACA AAAACAAGAA
  GCAAACAAAC AAATAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51136725	NES14338332	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39658583					SNP	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51136725	NES14338332	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95942725 () rs orientation: forward

Symbol	Name	Function Class
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr277718	regulatory region 277718	1125 bp distal
Rr285448	regulatory region 285448	within coordinates