rs39665821 SNP Detail

Summary

• ID
  rs39665821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61229326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCTGCA AAGACAAAAT
  GATGCTGTGT ATCTTGGCAC ATGTGAGCAC ATATTTTGAA TTGCATGTTT GCCTCCTGGG
  GAGAGAAACT TGTTGGACCG TGAGATGTGC GTATCTTCAA CCTATTTTTG TAAGTGGCCA
  TGCACTGGAT ATGCATTGCA TGTGGATATG CGGTTGTTCC CACTGGGCTT TGTTTTTTAA
  R
  TCTTTGCACC TCCATGCACG ATTCTGGACT CCACTATGCT GAGTTCCCAA GTGTGTCTAT
  CTGCCCGTCT CTCTGCCACT GTTACAGGCA GCTTTTGGGG AGTCTTCAAA CAGGGTGACA
  CTGAGTCAGG ATAGAAAGAT ACGGAAAGGT GAAAGGACAT GAGGAGTAAA AGGAGCCCCT
  CCCAACCCCC ATACAAACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50414450	NES13454344	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39665821					SNP	A	A	A	A	A	A	G	A	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50414450	NES13454344	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61229326 () rs orientation: forward

Symbol	Name	Function Class
Rr538764	regulatory region 538764	166 bp proximal
Tssr151399	transcription start site region 151399	387 bp upstream
Tssr151400	transcription start site region 151400	417 bp upstream
Tssr151401	transcription start site region 151401	445 bp upstream
Tssr151402	transcription start site region 151402	533 bp upstream
Tssr151403	transcription start site region 151403	557 bp upstream