rs39674747 SNP Detail

Summary

• ID
  rs39674747
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87972088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACTAACA TTATTCTAAA
  CTAGGATCGA TGAGTACGTG TGTATCCTAT ATACAAGTAA GCATTATCTT CTGGAATATA
  ATTACATTAT TATTGTGTTT TGTTTAACAG GTTTGAGTGG AAAATCCACA TCTCCATTTT
  CTTTTCTGCT GTAATTACTT CTCATTACCA ACATATTGGG ATAGATGTAT AAATGATACA
  R
  AAGTGGTAAA CCAACAGAAT GCTCCAAAAT AGTTCCAGAG TATCTTCTAG TCTTGTACAT
  TTCCATTGAA TGTGTTAGGT CTGCTTGTGG GTTTCATCTC TGCAGGGTTG ATGACTATTG
  AGACTGTCTT CACTTCTGCT CCCATGTCAC TGAACCACAT TCTTTTCAAA AAATAAAACT
  TCAAGTGCAT GCTTTTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51174246	NES13832864	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39674747					SNP	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51174246	NES13832864	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87972088 () rs orientation: forward

Symbol	Name	Function Class
Csn1s2b	casein alpha s2-like B	within coordinates
Gm42794	predicted gene 42794	within coordinates
Prr27	proline rich 27	1468 bp upstream
Rr378252	regulatory region 378252	533 bp downstream
Tssr46931	transcription start site region 46931	1446 bp upstream
Tssr46932	transcription start site region 46932	1530 bp upstream