rs39726780 SNP Detail

Summary

• ID
  rs39726780
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:71058418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGATAATC CTGAAGTTTG
  GGACGCTCTG GCCACTACAC TCAACAAATC CCAAAATGAT CACTCAAGTT AGCCGATCCT
  GAGAAATGAC ATCTGATAAA CAAACTGTAT GCGGAGAGCA GAAAGAGCTT AGCAAAAGGA
  AAAGACTCGG TGACCTAAGG CCTCGGGAAC ACTGTCGAGC TGTAGATCGT TGAACAGCGG
  M
  ACACAGGACA GGTTGGTAGC GAGAACTTAA TCCTAACTAA TATTGTAATA AAAGGGAAGC
  TTGTAACAAC TAATTTTTTA ATTATAAAAT GAGTCAGCAG TTGAGAGTAA ATGTAGGTAA
  GTCTGCACTG ATAATAGTAT CAACAAAATA AAAGGAGAGA GGGCTTGATG GGAGGTGTCT
  GTGGGAGGAG GTGGGAAACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50734968	NES14244214	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A		C	C	A	C
ss136612562	ENSMUSSNP300772	ENSEMBL	ENSEMBL_Sanger	f	SNP		C										A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39726780					SNP	C	C	C	C	C	C	C	C	C	C	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50734968	NES14244214	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:71058418 () rs orientation: forward

Symbol	Name	Function Class
Aqp9	aquaporin 9	within coordinates
Gm32714	predicted gene, 32714	within coordinates
Rr682494	regulatory region 682494	655 bp distal