rs39729271 SNP Detail

Summary

• ID
  rs39729271
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43114874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGACCTTG CATTGCTCGG CCCCCTCGCG
  GCCGCCCGCG GACATCGCGT GGAGTCTGGC AGACCCCACA GAGGCCGCAG TGCCTGCGGG
  GCCTCGCCTC CTGCTGCCCG CTGTGGGGCC AGGCCATGGC GGCGCTTACG CCTGCATCGC
  S
  GCGAACCCTC GCACTGGCCA CCGCCGGCGT TCAGTGTTCA ACCTCACTGT GGCGGGTAAG
  AGCAGTAGGG GCCGTCCAGC AGCAGAAGAG GGGAAGCACA TGGAGTCCTG GGTGTCAGCA
  AAGAGAAGAG ACAGCGAGGG GGCGTGCCCT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51478097	NES13969839	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	C		G
ss322197032	CHEV_7_50720820	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39729271					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478097	NES13969839	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43114874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	within coordinates
Cpgi18933	CpG island 18933	712 bp proximal
Etfbl	electron transferring flavoprotein, beta polypeptide like	1863 bp downstream
Gm39000	predicted gene, 39000	within coordinates
Rr400282	regulatory region 400282	280 bp upstream
Rr645966	regulatory region 645966	586 bp distal
Rr645967	regulatory region 645967	58 bp proximal
Rr645968	regulatory region 645968	120 bp proximal
Rr645969	regulatory region 645969	128 bp proximal
Rr645970	regulatory region 645970	820 bp proximal
Rr645971	regulatory region 645971	1127 bp proximal
Tssr66010	transcription start site region 66010	558 bp upstream
Tssr72134	transcription start site region 72134	1198 bp upstream
Tssr72135	transcription start site region 72135	113 bp downstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates