rs39732062 SNP Detail

Summary

• ID
  rs39732062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127920585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTTGTAC ACATGGGGTA
  ATAACTGGTA GTAAAGCAAC ATTTTCCTAC AGTACTACTT CCATTTCTGT TGTATTCAGT
  TATTGAAAAT GAAGATACAG AAGTTTGGAT TGTTGAAAAC TTGCTACATA GAACCCCCTG
  TTACTTTTTT TAAAGCTGTG TTACATTATG GATTCTCTAA AATTTACAGG TTTTTATTTT
  Y
  TTATTGTTAT ATAAAGAAAC TTTGTTATAT TAAGTTCAGT AAAAGGAAAA TATCAAAAAA
  GAGGATTATT TGTTCTTGAG ACTTTTTTTT TTTGGTTTTT CGAGACAGGG TTTCTCTGTA
  TAGCCCTGGC TGTCCTGGAG CTCACTCTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCT
  GCCCGCCTCT GCCTCCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50944583	NES14144982	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39732062					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944583	NES14144982	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127920585 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Cpgi2382	CpG island 2382	569 bp distal
Gm47438	predicted gene, 47438	1533 bp upstream
Gm55458	predicted gene, 55458	573 bp upstream
Mir677	microRNA 677	570 bp upstream
Rr402340	regulatory region 402340	1404 bp downstream
Rr441096	regulatory region 441096	1657 bp distal
Rr441097	regulatory region 441097	1433 bp distal
Rr441098	regulatory region 441098	1753 bp proximal
Rr441099	regulatory region 441099	1853 bp proximal
Snord59a	small nucleolar RNA, C/D box 59A	500 bp downstream
Tssr96319	transcription start site region 96319	1407 bp downstream
Tssr96320	transcription start site region 96320	778 bp downstream
Tssr96321	transcription start site region 96321	731 bp downstream
Tssr96322	transcription start site region 96322	794 bp upstream
Tssr96323	transcription start site region 96323	1315 bp upstream
Tssr96324	transcription start site region 96324	1416 bp upstream
Tssr96325	transcription start site region 96325	1576 bp upstream
Tssr96326	transcription start site region 96326	1593 bp upstream
Tssr96327	transcription start site region 96327	1609 bp upstream
Tssr96328	transcription start site region 96328	1656 bp upstream
Tssr99834	transcription start site region 99834	1735 bp upstream