rs39747079 SNP Detail

Summary

• ID
  rs39747079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:143340517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCATCCT TTGGGGCAGG
  CTCTGTGGCG AAGGAATCCT CCTGCCGTTT GAGGAAGTAC AAGTGCGTTT TCAGATTCCA
  TCCGGTGAAG CGTTCCGTTC TTACCGAGGG TCAGGCCAGG TGGGCCACCG TCTGTAAGGC
  AGTACACAGT GACCTGTCCA CTGTCCAGGG CTGCTCCTGC TCCACCTTCC TCTTTGTCTA
  Y
  TTTCCAGTTT AATGAAAACA CAGCTCAGAA AGATAAACTT CATGCCAATC CCATGTCAGG
  AATGACTCTT GAAAATACTT ACTTTATATT ATTATCATCA TCATTTATTA ATGAATTTAT
  TTGGTATGCC TCCACAACAT GGGTGAGGGG CTACTAACAC TGTATGTATG ACATCCAAAC
  AACTGCATCA CTGCCAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51458230	NES13996295	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs39747079					SNP	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51458230	NES13996295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:143340517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18149	CpG island 18149	22 bp distal
Gm67127	predicted gene, 67127	within coordinates
Rr640842	regulatory region 640842	664 bp distal